A B C D E F G H I L M N O P R S T U V W X Z

S

SafeXMLString(Node) - Static method in class algalcommand.io.XMLWriter

Deprecated. Will be discontinuing the use of SAX parsers (due to lack of thread safety)

saveConfig(Document) - Method in class algalcommand.alpha.OldPBRForm

saveConfig(Document) - Method in class algalcommand.script.ScriptManager

Note that the values of global variables in the script will not be saved in the configuration, but can be saved and loaded using the provided utilities.

saveReadLocalFile(String) - Method in class algalcommand.script.FileIO

Reads the contents of the specified file as text.

saveTextToLocalFile(String, String) - Method in class algalcommand.script.FileIO

Saves a block of text to a given file path relative to the program folder.

saveVariable(boolean, String) - Method in class algalcommand.script.FileIO

Saves a variable to a temporary file that will persist after the program closes.

saveVariable(int, String) - Method in class algalcommand.script.FileIO

Saves a variable to a temporary file that will persist after the program closes.

saveVariable(long, String) - Method in class algalcommand.script.FileIO

Saves a variable to a temporary file that will persist after the program closes.

saveVariable(double, String) - Method in class algalcommand.script.FileIO

Saves a variable to a temporary file that will persist after the program closes.

saveVariable(String, String) - Method in class algalcommand.script.FileIO

Saves a variable to a temporary file that will persist after the program closes.

scanner - Static variable in class algalcommand.testbench.MainFrame

Schedule - Class in algalcommand.io

Schedule() - Constructor for class algalcommand.io.Schedule

Default constructor

schedule_spinner - Variable in class algalcommand.alpha.OldPBRForm

ScheduleKeeper - Class in algalcommand.io

This class is used to manipulate an object based on a schedule.

ScheduleKeeper() - Constructor for class algalcommand.io.ScheduleKeeper

default constructor, you must use createSchedule(), setTarget(), and setUpdatePeriodInMinutes() before using start()

ScheduleKeeper(Object, File, double) - Constructor for class algalcommand.io.ScheduleKeeper

Initializes with the given targets and schedule

SCRIPT_DIRECTORY_PATH - Static variable in class algalcommand.Properties

This string is the filepath to the folder that holds scripting related resources

SCRIPT_FUNCTION_DEINITIALIZE - Static variable in class algalcommand.Properties

This is the name of the script function that is called everytime the script file is closed (such as when the program is closed or the PBR is otherwise interrupted during an experiment).

SCRIPT_FUNCTION_ENDEXPERIMENT - Static variable in class algalcommand.Properties

function experimentStart(){
/* do stuff that happens only once, at the end of the experiement */
}

SCRIPT_FUNCTION_STARTEXPERIMENT - Static variable in class algalcommand.Properties

function experimentStart(){
/* do stuff that happens only once, at the beginning of the experiement */
}

SCRIPT_FUNCTION_TURBIDITYEVENT - Static variable in class algalcommand.Properties

This is the name of the script function that is called whenever turbidity data arrives from the hardware.

function turbidityEvent(transmission){
/* Do stuff related to transmission, transmission is measured in volts*/
}

SCRIPT_HEADER_FILE - Static variable in class algalcommand.Properties

This File should point to the header for PBR scripts.

SCRIPT_NAME - Variable in class algalcommand.script.FileIO

This is the name of this object from within the javascript

ScriptManager - Class in algalcommand.script

The ScriptManager class is the master controller for Pbotobioreactor (PBR) behavior.

ScriptManager() - Constructor for class algalcommand.script.ScriptManager

sendCommand(String, PrintWriter) - Static method in class algalcommand.alpha.Photobioreactor

Formats the given command to PBR command notation (basically add '>' as a prefix) and sends it down the provided output stream

sendCommand(String) - Method in class algalcommand.alpha.Photobioreactor

Formats the given command to PBR command notation (basically add '>' as a prefix) and sends it down the provided output stream.

sendCommand(String) - Method in class algalcommand.io.AlgalNetIO

Sends a command to the PBRBrain over the network

sendCommand(String) - Method in class algalcommand.testbench.PBRTestPanel

setAttribute(String, String) - Method in class algalcommand.io.xml.Element

Sets the value of an attribute for this element If the attribute does not already exist, it is automatically created.

setHours(int) - Method in class algalcommand.io.SimpleTime

Sets the hour time component

setMAC(String) - Method in class algalcommand.alpha.Photobioreactor

The PBRBrain has no way of seeing its own MAC address, but its ethernet module transmits its MAC during network discovery.

setMinutes(int) - Method in class algalcommand.io.SimpleTime

Sets the minute time component

setPBRName(String) - Method in class algalcommand.alpha.OldPBRForm

setPhotobioreactor(Photobioreactor) - Method in class algalcommand.alpha.PBRPanelAlpha

setSeconds(int) - Method in class algalcommand.io.SimpleTime

Sets the second time component

setSeconds(double) - Method in class algalcommand.io.SimpleTime

Sets the second time component

setSolar(double) - Method in class algalcommand.alpha.OldPBRForm

Sets the intensity of the Solar LED

setStir(double) - Method in class algalcommand.alpha.OldPBRForm

Sets the stirring spead

setStir(int) - Method in class algalcommand.alpha.OldPBRForm

Sets the stirring spead

setStir(boolean) - Method in class algalcommand.alpha.OldPBRForm

setTagName(String) - Method in class algalcommand.io.xml.Element

Sets the name of this tag.

setTarget(Object) - Method in class algalcommand.io.ScheduleKeeper

Sets the object to be updated periodically from the schedule

setTime(String) - Method in class algalcommand.io.SimpleTime

setTime(Date) - Method in class algalcommand.io.SimpleTime

Sets the time from the given date object.

setTime(Calendar) - Method in class algalcommand.io.SimpleTime

Sets the time from the given Calendar object.

setUpdatePeriodInMinutes(double) - Method in class algalcommand.io.ScheduleKeeper

Sets the update period

setUpdatePeriodInSeconds(double) - Method in class algalcommand.io.ScheduleKeeper

Sets the update period

setValve(boolean) - Method in class algalcommand.alpha.OldPBRForm

sets whether the gas valve is on or off

showAboutBox() - Method in class algalcommand.alpha.AlgalCommandView

showException(Class, Exception) - Static method in class algalcommand.io.ErrorHandler

Does something to indicate to the user that an expception has occured.

showException(Class, Exception, String) - Static method in class algalcommand.io.ErrorHandler

Does something to indicate to the user that an expception has occured.

SimpleTime - Class in algalcommand.io

SimpleTime() - Constructor for class algalcommand.io.SimpleTime

SimpleTime(String) - Constructor for class algalcommand.io.SimpleTime

Creates an object frmo a time string

SimpleTime(Date) - Constructor for class algalcommand.io.SimpleTime

Creates an object from a date object

SimpleTime(Calendar) - Constructor for class algalcommand.io.SimpleTime

Creates an object from a calendar object

sinday_checkbox - Variable in class algalcommand.alpha.OldPBRForm

socket - Variable in class algalcommand.testbench.PBRTestPanel

solarvoltage_spinner - Variable in class algalcommand.alpha.OldPBRForm

speed_spinner - Variable in class algalcommand.alpha.OldPBRForm

start() - Method in class algalcommand.io.ScheduleKeeper

Starts updating the target from the schedule

startListening() - Method in class algalcommand.io.AlgalNetIO

startup() - Method in class algalcommand.alpha.AlgalCommandApp

At startup create and show the main frame of the application.

stderrs - Static variable in class algalcommand.io.ErrorHandler

stir_button - Variable in class algalcommand.alpha.OldPBRForm

stopListening() - Method in class algalcommand.io.AlgalNetIO

stopme - Static variable in class algalcommand.alpha.Tester

stringToXML(String) - Method in class algalcommand.io.xml.XMLFormatter

Formats the given string for XML by substituting characters with special meaning to their escape sequences.